1 HAMP#1
68-137 aa · 70 aa · 18.9% of protein
Raw token
HAMP:68:0.000000000707:137:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS07505
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS07505Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 371 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation3 items
2 HisKA#2
155-219 aa · 65 aa · 17.5% of protein
Raw token
HisKA:155:0.000000132:219:65:643 HATPase_c#3
269-371 aa · 103 aa · 27.8% of protein
Raw token
HATPase_c:269:6.7e-19:371:107:109- Raw architecture: HAMP:68:0.000000000707:137:70:69#HisKA:155:0.000000132:219:65:64#HATPase_c:269:6.7e-19:371:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1460702-1462479Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_14660RefSeq proteinWP_163051863.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00014Context members
Aargi30884_RS07505Aargi30884_RS07510
Partner locus tags
Aargi30884_RS07505Aargi30884_RS07510
Partner old locus tags
Aargi30884_14660Aargi30884_14670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_163051863.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TIG7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TIG7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS07505Primary locus identifier stored in the genes table.
Old locus tagAargi30884_14660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 460 702-1 461 817 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 460 702-1 462 479 ntGCF_010537155::NZ_AP019695.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 460 702-1 462 479 nt1 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 460 702 nt1 462 479 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS07505GCF_010537155#Aargi30884_RS07505
HKClassicCurrent focus
1 460 702-1 461 817 nt · Reverse (-)
Aargi30884_RS07510GCF_010537155#Aargi30884_RS07510
RROmpR
1 461 814-1 462 479 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS07505The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2678104
Simplified PFAM architecture for HKOC_2678104
PFAM domain coverage: 218 / 371 aa (58.8%)
1 aa371 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[85-136] | HisKA[156-219] | HATPase_c[269-370]
- Domain count: 3
- Matched identifier: HKOC_2678104
- Positioned domains: HAMP 85-136 ; HisKA 156-219 ; HATPase_c 269-370
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS07505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key