1 Response_reg#1
5-109 aa · 105 aa · 12.9% of protein
Raw token
Response_reg:5:5.36e-23:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS06830
Response regulator, RpfG family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeRpfGLength812 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS06830Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length812 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 812 aa (43.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa812 aa
Domain-by-domain annotation3 items
2 HD#2
194-298 aa · 105 aa · 12.9% of protein
Raw token
HD:194:0.0000000000000659:298:105:1103 GGDEF#3
652-795 aa · 144 aa · 17.7% of protein
Raw token
GGDEF:652:2.94e-35:795:162:160- Raw architecture: Response_reg:5:5.36e-23:109:106:111#HD:194:0.0000000000000659:298:105:110#GGDEF:652:2.94e-35:795:162:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1325520-1330815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_13400RefSeq proteinWP_118361587.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00012Context members
Aargi30884_RS06820Aargi30884_RS06830
Partner locus tags
Aargi30884_RS06820Aargi30884_RS06830
Partner old locus tags
Aargi30884_13380Aargi30884_13400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118361587.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TI89Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TI89_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS06830Primary locus identifier stored in the genes table.
Old locus tagAargi30884_13400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 328 377-1 330 815 nt2 439 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 325 520-1 330 815 ntGCF_010537155::NZ_AP019695.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 325 520-1 330 815 nt5 296 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 325 520 nt1 330 815 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS06820GCF_010537155#Aargi30884_RS06820
HKHybrid
1 325 520-1 328 024 nt · Reverse (-)
Aargi30884_RS06830GCF_010537155#Aargi30884_RS06830
RRRpfGCurrent focus
1 328 377-1 330 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS06830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0015341
Simplified PFAM architecture for RROC_0015341
PFAM domain coverage: 379 / 812 aa (46.7%)
1 aa812 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[5-111] | HD_5[190-319] | GGDEF[652-793]
- Domain count: 3
- Matched identifier: RROC_0015341
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; HD_5 190-319 ; HD_5 190-319 ; GGDEF 652-793 ; GGDEF 652-793
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS06830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key