1 HisKA#1
461-527 aa · 67 aa · 8.0% of protein
Raw token
HisKA:461:1.44e-19:527:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS06820
Histidine kinase, Hybrid
Amedibacterium intestinale · GCF_010537155
ClassHKTypeHybridLength834 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS06820Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length834 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 834 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa834 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
573-688 aa · 116 aa · 13.9% of protein
Raw token
HATPase_c:573:3.94e-29:688:116:1093 Response_reg#3
713-827 aa · 115 aa · 13.8% of protein
Raw token
Response_reg:713:1.25e-27:827:115:111- Raw architecture: HisKA:461:1.44e-19:527:67:64#HATPase_c:573:3.94e-29:688:116:109#Response_reg:713:1.25e-27:827:115:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1325520-1330815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_13380RefSeq proteinWP_163051795.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00012Context members
Aargi30884_RS06820Aargi30884_RS06830
Partner locus tags
Aargi30884_RS06820Aargi30884_RS06830
Partner old locus tags
Aargi30884_13380Aargi30884_13400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_163051795.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TJ58Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TJ58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS06820Primary locus identifier stored in the genes table.
Old locus tagAargi30884_13380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 325 520-1 328 024 nt2 505 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 325 520-1 330 815 ntGCF_010537155::NZ_AP019695.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 325 520-1 330 815 nt5 296 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 325 520 nt1 330 815 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS06820GCF_010537155#Aargi30884_RS06820
HKHybridCurrent focus
1 325 520-1 328 024 nt · Reverse (-)
Aargi30884_RS06830GCF_010537155#Aargi30884_RS06830
RRRpfG
1 328 377-1 330 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS06820The current gene is the representative for this cluster.
PFAM architectureMCP-like_PDC_1 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0514781
Simplified PFAM architecture for HKOC_0514781
PFAM domain coverage: 387 / 834 aa (46.4%)
1 aa834 aa
MCP-like_PDC_1HisKAHATPase_cResponse_reg
- Simplified architecture: MCP-like_PDC_1 + HisKA + HATPase_c + Response_reg
- Raw architecture: MCP-like_PDC_1[92-179] | HisKA[461-527] | HATPase_c[573-688] | Response_reg[713-828]
- Domain count: 4
- Matched identifier: HKOC_0514781
- Positioned domains: MCP-like_PDC_1 92-179 ; HisKA 461-527 ; HATPase_c 573-688 ; Response_reg 713-828
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS06820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key