1 HisKA#1
430-497 aa · 68 aa · 10.4% of protein
Raw token
HisKA:430:0.00000000000832:497:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS06485
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength656 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_010537155#Aargi30884_RS06485Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length656 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 656 aa (27.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa656 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
540-652 aa · 113 aa · 17.2% of protein
Raw token
HATPase_c:540:7.37e-28:652:113:109- Raw architecture: HisKA:430:0.00000000000832:497:68:64#HATPase_c:540:7.37e-28:652:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_010537155::NZ_AP019695.1::G00011
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span1256572-1261472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_12700RefSeq proteinWP_163051763.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00011Context members
Aargi30884_RS06470Aargi30884_RS06475Aargi30884_RS06480Aargi30884_RS06485
Partner locus tags
Aargi30884_RS06470Aargi30884_RS06475Aargi30884_RS06480Aargi30884_RS06485
Partner old locus tags
Aargi30884_12670Aargi30884_12680Aargi30884_12690Aargi30884_12700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_163051763.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TI21Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TI21_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS06485Primary locus identifier stored in the genes table.
Old locus tagAargi30884_12700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 259 502-1 261 472 nt1 971 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 256 572-1 261 472 ntGCF_010537155::NZ_AP019695.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 256 572-1 261 472 nt4 901 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 256 572 nt1 261 472 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
Aargi30884_RS06470GCF_010537155#Aargi30884_RS06470
RROmpR
1 256 572-1 257 273 nt · Reverse (-)
Aargi30884_RS06475GCF_010537155#Aargi30884_RS06475
HKClassic
1 257 263-1 258 783 nt · Reverse (-)
Aargi30884_RS06480GCF_010537155#Aargi30884_RS06480
RROmpR
1 258 780-1 259 508 nt · Reverse (-)
Aargi30884_RS06485GCF_010537155#Aargi30884_RS06485
HKClassicCurrent focus
1 259 502-1 261 472 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS06485The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0881881
Simplified PFAM architecture for HKOC_0881881
PFAM domain coverage: 285 / 656 aa (43.4%)
1 aa656 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[161-266] | HisKA[430-497] | HATPase_c[541-651]
- Domain count: 3
- Matched identifier: HKOC_0881881
- Positioned domains: DUF4118 161-266 ; HisKA 430-497 ; HATPase_c 541-651
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS06485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key