1 Response_reg#1
8-117 aa · 110 aa · 45.5% of protein
Raw token
Response_reg:8:5.54e-37:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS06480
Response regulator OmpR family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_010537155#Aargi30884_RS06480Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 242 aa (77.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.2% of protein
Raw token
Trans_reg_C:155:3.24e-21:232:78:77- Raw architecture: Response_reg:8:5.54e-37:117:111:111#Trans_reg_C:155:3.24e-21:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_010537155::NZ_AP019695.1::G00011
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span1256572-1261472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_12690RefSeq proteinWP_174766921.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00011Context members
Aargi30884_RS06470Aargi30884_RS06475Aargi30884_RS06480Aargi30884_RS06485
Partner locus tags
Aargi30884_RS06470Aargi30884_RS06475Aargi30884_RS06480Aargi30884_RS06485
Partner old locus tags
Aargi30884_12670Aargi30884_12680Aargi30884_12690Aargi30884_12700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_174766921.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TGP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TGP2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS06480Primary locus identifier stored in the genes table.
Old locus tagAargi30884_12690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval1 258 780-1 259 508 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 256 572-1 261 472 ntGCF_010537155::NZ_AP019695.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span1 256 572-1 261 472 nt4 901 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 256 572 nt1 261 472 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
Aargi30884_RS06470GCF_010537155#Aargi30884_RS06470
RROmpR
1 256 572-1 257 273 nt · Reverse (-)
Aargi30884_RS06475GCF_010537155#Aargi30884_RS06475
HKClassic
1 257 263-1 258 783 nt · Reverse (-)
Aargi30884_RS06480GCF_010537155#Aargi30884_RS06480
RROmpRCurrent focus
1 258 780-1 259 508 nt · Reverse (-)
Aargi30884_RS06485GCF_010537155#Aargi30884_RS06485
HKClassic
1 259 502-1 261 472 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS06480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0850502
Simplified PFAM architecture for RROC_0850502
PFAM domain coverage: 186 / 242 aa (76.9%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_0850502
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS06480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key