1 Response_reg#1
4-113 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:4:4.39e-22:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS03195
Response regulator OmpR family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS03195Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 220 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:145:1.2e-22:219:76:77- Raw architecture: Response_reg:4:4.39e-22:113:111:111#Trans_reg_C:145:1.2e-22:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span618227-619905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_06200RefSeq proteinWP_163051493.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00007Context members
Aargi30884_RS03190Aargi30884_RS03195
Partner locus tags
Aargi30884_RS03190Aargi30884_RS03195
Partner old locus tags
Aargi30884_06190Aargi30884_06200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_163051493.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TG82Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TG82_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS03195Primary locus identifier stored in the genes table.
Old locus tagAargi30884_06200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval619 243-619 905 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span618 227-619 905 ntGCF_010537155::NZ_AP019695.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span618 227-619 905 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
618 227 nt619 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS03190GCF_010537155#Aargi30884_RS03190
HKClassic
618 227-619 246 nt · Reverse (-)
Aargi30884_RS03195GCF_010537155#Aargi30884_RS03195
RROmpRCurrent focus
619 243-619 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS03195The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1736526
Simplified PFAM architecture for RROC_1736526
PFAM domain coverage: 184 / 220 aa (83.6%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1736526
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS03195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key