1 HisKA#1
129-175 aa · 47 aa · 13.9% of protein
Raw token
HisKA:129:0.0000654:175:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS03190
Histidine kinase, Classic
Amedibacterium intestinale · GCF_010537155
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS03190Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 339 aa (46.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
220-329 aa · 110 aa · 32.4% of protein
Raw token
HATPase_c:220:1.89e-20:329:110:109- Raw architecture: HisKA:129:0.0000654:175:53:64#HATPase_c:220:1.89e-20:329:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span618227-619905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_06190RefSeq proteinWP_115714919.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00007Context members
Aargi30884_RS03190Aargi30884_RS03195
Partner locus tags
Aargi30884_RS03190Aargi30884_RS03195
Partner old locus tags
Aargi30884_06190Aargi30884_06200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_115714919.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TF08Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TF08_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS03190Primary locus identifier stored in the genes table.
Old locus tagAargi30884_06190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval618 227-619 246 nt1 020 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span618 227-619 905 ntGCF_010537155::NZ_AP019695.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span618 227-619 905 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
618 227 nt619 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS03190GCF_010537155#Aargi30884_RS03190
HKClassicCurrent focus
618 227-619 246 nt · Reverse (-)
Aargi30884_RS03195GCF_010537155#Aargi30884_RS03195
RROmpR
619 243-619 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS03190The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2840565
Simplified PFAM architecture for HKOC_2840565
PFAM domain coverage: 109 / 339 aa (32.2%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-329]
- Domain count: 1
- Matched identifier: HKOC_2840565
- Positioned domains: HATPase_c 221-329
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS03190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key