1 HisKA#1
252-312 aa · 61 aa · 12.8% of protein
Raw token
HisKA:252:0.0000000000000944:312:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F3Y00_RS02665
Histidine kinase, Classic
Francisella tularensis subsp. holarctica · GCF_010232785
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_010232785#F3Y00_RS02665Stable P2CS identifier used across views.
GenomeGCF_010232785Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 475 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
365-470 aa · 106 aa · 22.3% of protein
Raw token
HATPase_c:365:3.24e-29:470:106:109- Raw architecture: HisKA:252:0.0000000000000944:312:61:64#HATPase_c:365:3.24e-29:470:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_010232785::NZ_CP044002.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span524239-525666Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF3Y00_02685RefSeq proteinWP_011648783.1
Context group ID
GCF_010232785::NZ_CP044002.1::G00001Context members
F3Y00_RS02665
Partner locus tags
F3Y00_RS02665
Partner old locus tags
F3Y00_02685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_011648783.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF3Y00_RS02665Primary locus identifier stored in the genes table.
Old locus tagF3Y00_02685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP044002.1Sequence record reported by the local genomic context database.
Genomic interval524 239-525 666 nt1 428 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span524 239-525 666 ntGCF_010232785::NZ_CP044002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010232785::NZ_CP044002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP044002.1All displayed genes belong to this local TCS context.
Neighborhood span524 239-525 666 nt1 428 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
524 239 nt525 666 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
F3Y00_RS02665GCF_010232785#F3Y00_RS02665
HKClassicCurrent focus
524 239-525 666 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000011405#AYI_RS08970Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1664358
Simplified PFAM architecture for HKOC_1664358
PFAM domain coverage: 168 / 475 aa (35.4%)
1 aa475 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[251-313] | HATPase_c[365-469]
- Domain count: 2
- Matched identifier: HKOC_1664358
- Positioned domains: HisKA 251-313 ; HATPase_c 365-469
Cluster members and taxonomy
Representative gene: GCF_000011405#AYI_RS08970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 119 857 · GCF_010232785
AssemblyASM1023278v1 · Complete Genomehaploid
Genome composition1 892 749 bp · 32,0% GCFrancisella tularensis subsp. holarctica
Signal transduction countsGenes 2 · HK 1 · RR 1CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key