1 Response_reg#1
4-116 aa · 113 aa · 21.4% of protein
Raw token
Response_reg:4:5.56e-24:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT712_RS01380
Response regulator, unclassified
Blautia wexlerae · GCF_009881435
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881435#GT712_RS01380Stable P2CS identifier used across views.
GenomeGCF_009881435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 527 aa (36.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
435-476 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:435:0.000000123:476:42:423 HTH_AraC#3
491-526 aa · 36 aa · 6.8% of protein
Raw token
HTH_AraC:491:0.000000479:526:36:42- Raw architecture: Response_reg:4:5.56e-24:116:113:111#HTH_AraC:435:0.000000123:476:42:42#HTH_AraC:491:0.000000479:526:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881435::NZ_WWVF01000002.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37083-40436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT712_01380RefSeq proteinWP_008705057.1
Context group ID
GCF_009881435::NZ_WWVF01000002.1::G00037Context members
GT712_RS01380GT712_RS01385
Partner locus tags
GT712_RS01380GT712_RS01385
Partner old locus tags
GT712_01380GT712_01385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008705057.1Primary protein accession used for annex mappings.
UniProt accessionA0A174U545Primary UniProt accession resolved in the annex database.
UniProt IDA0A174U545_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT712_RS01380Primary locus identifier stored in the genes table.
Old locus tagGT712_01380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVF01000002.1Sequence record reported by the local genomic context database.
Genomic interval37 083-38 666 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 083-40 436 ntGCF_009881435::NZ_WWVF01000002.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881435::NZ_WWVF01000002.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span37 083-40 436 nt3 354 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 083 nt40 436 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT712_RS01380GCF_009881435#GT712_RS01380
RRunclassifiedCurrent focus
37 083-38 666 nt · Reverse (-)
GT712_RS01385GCF_009881435#GT712_RS01385
HKClassic
38 703-40 436 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404775#ARA22_RS10650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116019
Simplified PFAM architecture for RROC_0116019
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0116019
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_001404775#ARA22_RS10650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881435
AssemblyASM988143v1 · Scaffoldhaploid
Genome composition4 245 643 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 140 · HK 65 · RR 72CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key