1 Response_reg#1
6-115 aa · 110 aa · 86.6% of protein
Raw token
Response_reg:6:0.00000000000000138:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS13580
Response regulator, CheY family
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeCheYLength127 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881245#GT637_RS13580Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length127 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 127 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa127 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.00000000000000138:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881245::NZ_WWUX01000009.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23966-24349Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_009881245::NZ_WWUX01000009.1::G00023Context members
GT637_RS13580
Partner locus tags
GT637_RS13580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238634365.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS13580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_WWUX01000009.1Sequence record reported by the local genomic context database.
Genomic interval23 966-24 349 nt384 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 966-24 349 ntGCF_009881245::NZ_WWUX01000009.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000009.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000009.1All displayed genes belong to this local TCS context.
Neighborhood span23 966-24 349 nt384 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 966 nt24 349 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT637_RS13580GCF_009881245#GT637_RS13580
RRCheYCurrent focus
23 966-24 349 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS04260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961891
Simplified PFAM architecture for RROC_0961891
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-118] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0961891
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS04260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key