1 Response_reg#1
3-104 aa · 102 aa · 43.8% of protein
Raw token
Response_reg:3:0.000000000203:104:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS12125
Response regulator LytTR family
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881245#GT637_RS12125Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-226 aa · 84 aa · 36.1% of protein
Raw token
LytTR:143:0.00000000186:226:90:98- Raw architecture: Response_reg:3:0.000000000203:104:106:111#LytTR:143:0.00000000186:226:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881245::NZ_WWUX01000123.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span396-1097Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_12140RefSeq proteinWP_129982221.1
Context group ID
GCF_009881245::NZ_WWUX01000123.1::G00006Context members
GT637_RS12125
Partner locus tags
GT637_RS12125
Partner old locus tags
GT637_12140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129982221.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS12125Primary locus identifier stored in the genes table.
Old locus tagGT637_12140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000123.1Sequence record reported by the local genomic context database.
Genomic interval396-1 097 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span396-1 097 ntGCF_009881245::NZ_WWUX01000123.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000123.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000123.1All displayed genes belong to this local TCS context.
Neighborhood span396-1 097 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
396 nt1 097 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT637_RS12125GCF_009881245#GT637_RS12125
RRLytTRCurrent focus
396-1 097 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS11990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1091754
Simplified PFAM architecture for RROC_1091754
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-105] | LytTR[143-225]
- Domain count: 2
- Matched identifier: RROC_1091754
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; LytTR 143-225 ; LytTR 143-225
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS11990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key