1 Response_reg#1
6-118 aa · 113 aa · 21.4% of protein
Raw token
Response_reg:6:1.16e-27:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS09145
Response regulator, unclassified
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS09145Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 529 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-472 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:432:0.00000000216:472:41:423 HTH_AraC#3
486-524 aa · 39 aa · 7.4% of protein
Raw token
HTH_AraC:486:0.0000469:524:39:42- Raw architecture: Response_reg:6:1.16e-27:118:113:111#HTH_AraC:432:0.00000000216:472:41:42#HTH_AraC:486:0.0000469:524:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000053.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6226-9523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_09155RefSeq proteinWP_129981768.1
Context group ID
GCF_009881245::NZ_WWUX01000053.1::G00018Context members
GT637_RS09140GT637_RS09145
Partner locus tags
GT637_RS09140GT637_RS09145
Partner old locus tags
GT637_09150GT637_09155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129981768.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS09145Primary locus identifier stored in the genes table.
Old locus tagGT637_09155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000053.1Sequence record reported by the local genomic context database.
Genomic interval7 934-9 523 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 226-9 523 ntGCF_009881245::NZ_WWUX01000053.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000053.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000053.1All displayed genes belong to this local TCS context.
Neighborhood span6 226-9 523 nt3 298 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 226 nt9 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS09140GCF_009881245#GT637_RS09140
HKClassic
6 226-7 944 nt · Reverse (-)
GT637_RS09145GCF_009881245#GT637_RS09145
RRunclassifiedCurrent focus
7 934-9 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS09090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113275
Simplified PFAM architecture for RROC_0113275
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[447-525]
- Domain count: 2
- Matched identifier: RROC_0113275
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 447-525 ; HTH_18 447-525
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS09090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key