1 dCache_1#1
157-262 aa · 106 aa · 18.5% of protein
Raw token
dCache_1:157:0.0000144:262:114:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS09140
Histidine kinase, Classic
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassHKTypeClassicLength572 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS09140Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length572 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage359 / 572 aa (62.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa572 aa
Domain-by-domain annotation4 items
2 HAMP#2
278-348 aa · 71 aa · 12.4% of protein
Raw token
HAMP:278:0.00000000113:348:71:693 His_kinase#3
363-442 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:363:3.18e-34:442:80:804 HATPase_c#4
462-563 aa · 102 aa · 17.8% of protein
Raw token
HATPase_c:462:6.09e-16:563:105:109- Raw architecture: dCache_1:157:0.0000144:262:114:195#HAMP:278:0.00000000113:348:71:69#His_kinase:363:3.18e-34:442:80:80#HATPase_c:462:6.09e-16:563:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000053.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6226-9523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_09150RefSeq proteinWP_129981767.1
Context group ID
GCF_009881245::NZ_WWUX01000053.1::G00018Context members
GT637_RS09140GT637_RS09145
Partner locus tags
GT637_RS09140GT637_RS09145
Partner old locus tags
GT637_09150GT637_09155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129981767.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS09140Primary locus identifier stored in the genes table.
Old locus tagGT637_09150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000053.1Sequence record reported by the local genomic context database.
Genomic interval6 226-7 944 nt1 719 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 226-9 523 ntGCF_009881245::NZ_WWUX01000053.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000053.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000053.1All displayed genes belong to this local TCS context.
Neighborhood span6 226-9 523 nt3 298 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 226 nt9 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS09140GCF_009881245#GT637_RS09140
HKClassicCurrent focus
6 226-7 944 nt · Reverse (-)
GT637_RS09145GCF_009881245#GT637_RS09145
RRunclassified
7 934-9 523 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS09085Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1203544
Simplified PFAM architecture for HKOC_1203544
PFAM domain coverage: 231 / 572 aa (40.4%)
1 aa572 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[299-347] | His_kinase[364-442] | HATPase_c[462-564]
- Domain count: 3
- Matched identifier: HKOC_1203544
- Positioned domains: HAMP 299-347 ; His_kinase 364-442 ; HATPase_c 462-564
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS09085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key