1 HisKA#1
420-487 aa · 68 aa · 10.4% of protein
Raw token
HisKA:420:0.00000000000052:487:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS05155
Histidine kinase, Classic
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassHKTypeClassicLength653 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS05155Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length653 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 653 aa (27.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa653 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
531-643 aa · 113 aa · 17.3% of protein
Raw token
HATPase_c:531:4.03e-28:643:113:109- Raw architecture: HisKA:420:0.00000000000052:487:68:64#HATPase_c:531:4.03e-28:643:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000020.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5271-7953Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_05160RefSeq proteinWP_129981191.1
Context group ID
GCF_009881245::NZ_WWUX01000020.1::G00016Context members
GT637_RS05150GT637_RS05155
Partner locus tags
GT637_RS05150GT637_RS05155
Partner old locus tags
GT637_05155GT637_05160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129981191.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS05155Primary locus identifier stored in the genes table.
Old locus tagGT637_05160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000020.1Sequence record reported by the local genomic context database.
Genomic interval5 992-7 953 nt1 962 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 271-7 953 ntGCF_009881245::NZ_WWUX01000020.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000020.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000020.1All displayed genes belong to this local TCS context.
Neighborhood span5 271-7 953 nt2 683 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 271 nt7 953 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS05150GCF_009881245#GT637_RS05150
RROmpR
5 271-6 011 nt · Forward (+)
GT637_RS05155GCF_009881245#GT637_RS05155
HKClassicCurrent focus
5 992-7 953 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS05160Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0890242
Simplified PFAM architecture for HKOC_0890242
PFAM domain coverage: 281 / 653 aa (43.0%)
1 aa653 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[151-252] | HisKA[420-487] | HATPase_c[532-642]
- Domain count: 3
- Matched identifier: HKOC_0890242
- Positioned domains: DUF4118 151-252 ; HisKA 420-487 ; HATPase_c 532-642
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS05160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key