1 Response_reg#1
3-112 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:3:4.69e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS04825
Response regulator OmpR family
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS04825Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 227 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 33.0% of protein
Raw token
Trans_reg_C:149:1.02e-26:223:75:77- Raw architecture: Response_reg:3:4.69e-32:112:111:111#Trans_reg_C:149:1.02e-26:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000018.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12545-14347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_04830RefSeq proteinWP_192924004.1
Context group ID
GCF_009881245::NZ_WWUX01000018.1::G00015Context members
GT637_RS04820GT637_RS04825
Partner locus tags
GT637_RS04820GT637_RS04825
Partner old locus tags
GT637_04825GT637_04830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_192924004.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS04825Primary locus identifier stored in the genes table.
Old locus tagGT637_04830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000018.1Sequence record reported by the local genomic context database.
Genomic interval13 664-14 347 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 545-14 347 ntGCF_009881245::NZ_WWUX01000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000018.1All displayed genes belong to this local TCS context.
Neighborhood span12 545-14 347 nt1 803 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 545 nt14 347 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS04820GCF_009881245#GT637_RS04820
HKClassic
12 545-13 651 nt · Reverse (-)
GT637_RS04825GCF_009881245#GT637_RS04825
RROmpRCurrent focus
13 664-14 347 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS04810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1368555
Simplified PFAM architecture for RROC_1368555
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1368555
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS04810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key