1 Response_reg#1
5-113 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:5:5.54e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS04675
Response regulator OmpR family
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS04675Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:153:2.84e-30:228:76:77- Raw architecture: Response_reg:5:5.54e-36:113:111:111#Trans_reg_C:153:2.84e-30:228:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000017.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17052-19065Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_04680RefSeq proteinWP_129981114.1
Context group ID
GCF_009881245::NZ_WWUX01000017.1::G00014Context members
GT637_RS04675GT637_RS13925
Partner locus tags
GT637_RS04675GT637_RS13925
Partner old locus tags
GT637_04680GT637_04685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129981114.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS04675Primary locus identifier stored in the genes table.
Old locus tagGT637_04680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000017.1Sequence record reported by the local genomic context database.
Genomic interval17 052-17 747 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 052-19 065 ntGCF_009881245::NZ_WWUX01000017.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000017.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000017.1All displayed genes belong to this local TCS context.
Neighborhood span17 052-19 065 nt2 014 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 052 nt19 065 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS04675GCF_009881245#GT637_RS04675
RROmpRCurrent focus
17 052-17 747 nt · Forward (+)
GT637_RS13925GCF_009881245#GT637_RS13925
HKClassic
17 740-19 065 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS04660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1169521
Simplified PFAM architecture for RROC_1169521
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1169521
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS04660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key