1 HisKA#1
467-533 aa · 67 aa · 9.8% of protein
Raw token
HisKA:467:0.00000000000061:533:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS03990
Histidine kinase, Classic
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassHKTypeClassicLength685 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS03990Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length685 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 685 aa (23.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa685 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
578-670 aa · 93 aa · 13.6% of protein
Raw token
HATPase_c:578:0.000000000294:670:97:109- Raw architecture: HisKA:467:0.00000000000061:533:67:64#HATPase_c:578:0.000000000294:670:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000014.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12805-15572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_03995RefSeq proteinWP_161220275.1
Context group ID
GCF_009881245::NZ_WWUX01000014.1::G00012Context members
GT637_RS03985GT637_RS03990
Partner locus tags
GT637_RS03985GT637_RS03990
Partner old locus tags
GT637_03990GT637_03995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161220275.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS03990Primary locus identifier stored in the genes table.
Old locus tagGT637_03995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000014.1Sequence record reported by the local genomic context database.
Genomic interval13 515-15 572 nt2 058 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 805-15 572 ntGCF_009881245::NZ_WWUX01000014.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000014.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000014.1All displayed genes belong to this local TCS context.
Neighborhood span12 805-15 572 nt2 768 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 805 nt15 572 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS03985GCF_009881245#GT637_RS03985
RROmpR
12 805-13 509 nt · Forward (+)
GT637_RS03990GCF_009881245#GT637_RS03990
HKClassicCurrent focus
13 515-15 572 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS03980Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0803960
Simplified PFAM architecture for HKOC_0803960
PFAM domain coverage: 159 / 685 aa (23.2%)
1 aa685 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[467-533] | HATPase_c[578-669]
- Domain count: 2
- Matched identifier: HKOC_0803960
- Positioned domains: HisKA 467-533 ; HATPase_c 578-669
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS03980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key