1 HAMP#1
155-219 aa · 65 aa · 14.2% of protein
Raw token
HAMP:155:0.00000000000196:219:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS03955
Histidine kinase, Classic
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS03955Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 457 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-291 aa · 66 aa · 14.4% of protein
Raw token
HisKA:226:0.0000000000000479:291:66:643 HATPase_c#3
337-446 aa · 110 aa · 24.1% of protein
Raw token
HATPase_c:337:8.97e-32:446:110:109- Raw architecture: HAMP:155:0.00000000000196:219:65:69#HisKA:226:0.0000000000000479:291:66:64#HATPase_c:337:8.97e-32:446:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4300-6344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_03960RefSeq proteinWP_129981003.1
Context group ID
GCF_009881245::NZ_WWUX01000014.1::G00011Context members
GT637_RS03950GT637_RS03955
Partner locus tags
GT637_RS03950GT637_RS03955
Partner old locus tags
GT637_03955GT637_03960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129981003.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS03955Primary locus identifier stored in the genes table.
Old locus tagGT637_03960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000014.1Sequence record reported by the local genomic context database.
Genomic interval4 971-6 344 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 300-6 344 ntGCF_009881245::NZ_WWUX01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000014.1All displayed genes belong to this local TCS context.
Neighborhood span4 300-6 344 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 300 nt6 344 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS03950GCF_009881245#GT637_RS03950
RROmpR
4 300-4 971 nt · Forward (+)
GT637_RS03955GCF_009881245#GT637_RS03955
HKClassicCurrent focus
4 971-6 344 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS03945Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1877609
Simplified PFAM architecture for HKOC_1877609
PFAM domain coverage: 222 / 457 aa (48.6%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-219] | HisKA[226-289] | HATPase_c[338-446]
- Domain count: 3
- Matched identifier: HKOC_1877609
- Positioned domains: HAMP 171-219 ; HisKA 226-289 ; HATPase_c 338-446
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS03945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key