1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:3.27e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS03950
Response regulator OmpR family
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS03950Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:146:1.37e-25:220:77:77- Raw architecture: Response_reg:5:3.27e-37:114:111:111#Trans_reg_C:146:1.37e-25:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4300-6344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_03955RefSeq proteinWP_022424275.1
Context group ID
GCF_009881245::NZ_WWUX01000014.1::G00011Context members
GT637_RS03950GT637_RS03955
Partner locus tags
GT637_RS03950GT637_RS03955
Partner old locus tags
GT637_03955GT637_03960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022424275.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7K9X2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7K9X2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS03950Primary locus identifier stored in the genes table.
Old locus tagGT637_03955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000014.1Sequence record reported by the local genomic context database.
Genomic interval4 300-4 971 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 300-6 344 ntGCF_009881245::NZ_WWUX01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000014.1All displayed genes belong to this local TCS context.
Neighborhood span4 300-6 344 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 300 nt6 344 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS03950GCF_009881245#GT637_RS03950
RROmpRCurrent focus
4 300-4 971 nt · Forward (+)
GT637_RS03955GCF_009881245#GT637_RS03955
HKClassic
4 971-6 344 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000437715#QVO42_RS00715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589819
Simplified PFAM architecture for RROC_1589819
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_1589819
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_000437715#QVO42_RS00715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key