1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:5.1e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS03535
Response regulator OmpR family
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881245#GT637_RS03535Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 228 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-222 aa · 73 aa · 32.0% of protein
Raw token
Trans_reg_C:150:4.63e-30:222:74:77- Raw architecture: Response_reg:4:5.1e-25:113:111:111#Trans_reg_C:150:4.63e-30:222:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881245::NZ_WWUX01000012.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18906-19592Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_03540RefSeq proteinWP_129980942.1
Context group ID
GCF_009881245::NZ_WWUX01000012.1::G00008Context members
GT637_RS03535
Partner locus tags
GT637_RS03535
Partner old locus tags
GT637_03540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_129980942.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7KB60Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7KB60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS03535Primary locus identifier stored in the genes table.
Old locus tagGT637_03540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000012.1Sequence record reported by the local genomic context database.
Genomic interval18 906-19 592 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 906-19 592 ntGCF_009881245::NZ_WWUX01000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000012.1All displayed genes belong to this local TCS context.
Neighborhood span18 906-19 592 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 906 nt19 592 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT637_RS03535GCF_009881245#GT637_RS03535
RROmpRCurrent focus
18 906-19 592 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS03515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1316609
Simplified PFAM architecture for RROC_1316609
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1316609
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS03515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key