1 HAMP#1
54-122 aa · 69 aa · 18.4% of protein
Raw token
HAMP:54:0.00000139:122:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT637_RS00885
Histidine kinase, Classic
Catenibacterium sp. BIOML-A1 · GCF_009881245
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881245#GT637_RS00885Stable P2CS identifier used across views.
GenomeGCF_009881245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 374 aa (65.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
147-213 aa · 67 aa · 17.9% of protein
Raw token
HisKA:147:0.00000000000000595:213:67:643 HATPase_c#3
260-367 aa · 108 aa · 28.9% of protein
Raw token
HATPase_c:260:1.18e-25:367:109:109- Raw architecture: HAMP:54:0.00000139:122:69:69#HisKA:147:0.00000000000000595:213:67:64#HATPase_c:260:1.18e-25:367:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881245::NZ_WWUX01000002.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63094-64910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT637_00885RefSeq proteinWP_022424737.1
Context group ID
GCF_009881245::NZ_WWUX01000002.1::G00017Context members
GT637_RS00885GT637_RS00890
Partner locus tags
GT637_RS00885GT637_RS00890
Partner old locus tags
GT637_00885GT637_00890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022424737.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT637_RS00885Primary locus identifier stored in the genes table.
Old locus tagGT637_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUX01000002.1Sequence record reported by the local genomic context database.
Genomic interval63 094-64 218 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 094-64 910 ntGCF_009881245::NZ_WWUX01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881245::NZ_WWUX01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span63 094-64 910 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 094 nt64 910 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT637_RS00885GCF_009881245#GT637_RS00885
HKClassicCurrent focus
63 094-64 218 nt · Reverse (-)
GT637_RS00890GCF_009881245#GT637_RS00890
RROmpR
64 215-64 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS00890Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2658940
Simplified PFAM architecture for HKOC_2658940
PFAM domain coverage: 218 / 374 aa (58.3%)
1 aa374 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[78-120] | HisKA[147-213] | HATPase_c[260-367]
- Domain count: 3
- Matched identifier: HKOC_2658940
- Positioned domains: HAMP 78-120 ; HisKA 147-213 ; HATPase_c 260-367
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS00890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 626 · GCF_009881245
AssemblyASM988124v1 · Contighaploid
Genome composition2 553 613 bp · 35,0% GCCatenibacterium sp. BIOML-A1
Signal transduction countsGenes 40 · HK 18 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key