1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:0.00000000000000697:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT685_RS04005
Response regulator LytTR family
Blautia wexlerae · GCF_009881235
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009881235#GT685_RS04005Stable P2CS identifier used across views.
GenomeGCF_009881235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 39.4% of protein
Raw token
LytTR:137:1.93e-17:229:98:98- Raw architecture: Response_reg:4:0.00000000000000697:112:112:111#LytTR:137:1.93e-17:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009881235::NZ_WWUZ01000005.1::G00068
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span172120-172830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT685_04025RefSeq proteinWP_117942280.1
Context group ID
GCF_009881235::NZ_WWUZ01000005.1::G00068Context members
GT685_RS04005
Partner locus tags
GT685_RS04005
Partner old locus tags
GT685_04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117942280.1Primary protein accession used for annex mappings.
UniProt accessionA0A415L8G5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415L8G5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT685_RS04005Primary locus identifier stored in the genes table.
Old locus tagGT685_04025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval172 120-172 830 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span172 120-172 830 ntGCF_009881235::NZ_WWUZ01000005.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881235::NZ_WWUZ01000005.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span172 120-172 830 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 120 nt172 830 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT685_RS04005GCF_009881235#GT685_RS04005
RRLytTRCurrent focus
172 120-172 830 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460065#DWW86_RS03375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995584
Simplified PFAM architecture for RROC_0995584
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[139-229]
- Domain count: 2
- Matched identifier: RROC_0995584
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 139-229 ; LytTR 139-229
Cluster members and taxonomy
Representative gene: GCF_003460065#DWW86_RS03375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881235
AssemblyASM988123v1 · Scaffoldhaploid
Genome composition4 251 753 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 140 · HK 66 · RR 72CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key