1 Response_reg#1
3-110 aa · 108 aa · 43.4% of protein
Raw token
Response_reg:3:1.87e-24:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT685_RS03150
Response regulator, unclassified
Blautia wexlerae · GCF_009881235
ClassRRTypeunclassifiedLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009881235#GT685_RS03150Stable P2CS identifier used across views.
GenomeGCF_009881235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 249 aa (55.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
214-244 aa · 31 aa · 12.4% of protein
Raw token
HTH_AraC:214:0.00000105:244:31:42- Raw architecture: Response_reg:3:1.87e-24:110:108:111#HTH_AraC:214:0.00000105:244:31:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009881235::NZ_WWUZ01000004.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140381-143016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT685_03170RefSeq proteinWP_055149581.1
Context group ID
GCF_009881235::NZ_WWUZ01000004.1::G00056Context members
GT685_RS03145GT685_RS03150
Partner locus tags
GT685_RS03145GT685_RS03150
Partner old locus tags
GT685_03165GT685_03170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149581.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YM71Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YM71_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT685_RS03150Primary locus identifier stored in the genes table.
Old locus tagGT685_03170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWUZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval142 267-143 016 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span140 381-143 016 ntGCF_009881235::NZ_WWUZ01000004.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009881235::NZ_WWUZ01000004.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWUZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span140 381-143 016 nt2 636 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 381 nt143 016 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT685_RS03145GCF_009881235#GT685_RS03145
HKClassic
140 381-142 225 nt · Forward (+)
GT685_RS03150GCF_009881235#GT685_RS03150
RRunclassifiedCurrent focus
142 267-143 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS03390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0733089
Simplified PFAM architecture for RROC_0733089
PFAM domain coverage: 189 / 249 aa (75.9%)
1 aa249 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[167-244]
- Domain count: 2
- Matched identifier: RROC_0733089
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; HTH_18 167-244 ; HTH_18 167-244
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS03390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_009881235
AssemblyASM988123v1 · Scaffoldhaploid
Genome composition4 251 753 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 140 · HK 66 · RR 72CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key