1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:1.19e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT690_RS04280
Response regulator NarL family
Blautia massiliensis (ex Durand et al. 2017) · GCF_009876875
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009876875#GT690_RS04280Stable P2CS identifier used across views.
GenomeGCF_009876875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:8.52e-22:201:53:58- Raw architecture: Response_reg:3:1.19e-25:103:101:111#HTH_LUXR:149:8.52e-22:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009876875::NZ_WWVU01000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span270350-272285Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT690_04295RefSeq proteinWP_021651843.1
Context group ID
GCF_009876875::NZ_WWVU01000003.1::G00022Context members
GT690_RS04275GT690_RS04280
Partner locus tags
GT690_RS04275GT690_RS04280
Partner old locus tags
GT690_04290GT690_04295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021651843.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8TC60Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8TC60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT690_RS04280Primary locus identifier stored in the genes table.
Old locus tagGT690_04295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWVU01000003.1Sequence record reported by the local genomic context database.
Genomic interval271 665-272 285 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span270 350-272 285 ntGCF_009876875::NZ_WWVU01000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009876875::NZ_WWVU01000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWVU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span270 350-272 285 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
270 350 nt272 285 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT690_RS04275GCF_009876875#GT690_RS04275
HKClassic
270 350-271 531 nt · Forward (+)
GT690_RS04280GCF_009876875#GT690_RS04280
RRNarLCurrent focus
271 665-272 285 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS10190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081571
Simplified PFAM architecture for RROC_2081571
PFAM domain coverage: 156 / 206 aa (75.7%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[148-201]
- Domain count: 2
- Matched identifier: RROC_2081571
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 148-201 ; GerE 148-201
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS10190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_009876875
AssemblyASM987687v1 · Scaffoldhaploid
Genome composition3 545 818 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 74 · HK 34 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key