1 HAMP#1
202-268 aa · 67 aa · 13.5% of protein
Raw token
HAMP:202:0.000000000000029:268:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT581_RS03465
Histidine kinase, Classic
Dorea longicatena · GCF_009875725
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875725#GT581_RS03465Stable P2CS identifier used across views.
GenomeGCF_009875725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 495 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-362 aa · 78 aa · 15.8% of protein
Raw token
His_kinase:285:9.61e-35:362:78:803 HATPase_c#3
384-486 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:384:0.00000000000204:486:105:109- Raw architecture: HAMP:202:0.000000000000029:268:67:69#His_kinase:285:9.61e-35:362:78:80#HATPase_c:384:0.00000000000204:486:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875725::NZ_WWSE01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span160147-163269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT581_03475RefSeq proteinWP_243117839.1
Context group ID
GCF_009875725::NZ_WWSE01000003.1::G00035Context members
GT581_RS03460GT581_RS03465
Partner locus tags
GT581_RS03460GT581_RS03465
Partner old locus tags
GT581_03470GT581_03475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243117839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT581_RS03465Primary locus identifier stored in the genes table.
Old locus tagGT581_03475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSE01000003.1Sequence record reported by the local genomic context database.
Genomic interval161 782-163 269 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 147-163 269 ntGCF_009875725::NZ_WWSE01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875725::NZ_WWSE01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSE01000003.1All displayed genes belong to this local TCS context.
Neighborhood span160 147-163 269 nt3 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 147 nt163 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT581_RS03460GCF_009875725#GT581_RS03460
RRunclassified
160 147-161 778 nt · Forward (+)
GT581_RS03465GCF_009875725#GT581_RS03465
HKClassicCurrent focus
161 782-163 269 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167275#EAI84_RS03495Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1505669
Simplified PFAM architecture for HKOC_1505669
PFAM domain coverage: 231 / 495 aa (46.7%)
1 aa495 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[220-268] | His_kinase[285-362] | HATPase_c[384-487]
- Domain count: 3
- Matched identifier: HKOC_1505669
- Positioned domains: HAMP 220-268 ; His_kinase 285-362 ; HATPase_c 384-487
Cluster members and taxonomy
Representative gene: GCF_004167275#EAI84_RS03495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875725
AssemblyASM987572v1 · Contighaploid
Genome composition3 127 583 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key