1 Response_reg#1
5-117 aa · 113 aa · 46.9% of protein
Raw token
Response_reg:5:3.93e-26:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS13505
Response regulator, unclassified
Dorea longicatena · GCF_009875705
ClassRRTypeunclassifiedLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875705#GT580_RS13505Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 241 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
147-188 aa · 42 aa · 17.4% of protein
Raw token
HTH_AraC:147:0.00000000589:188:42:423 HTH_AraC#3
202-238 aa · 37 aa · 15.4% of protein
Raw token
HTH_AraC:202:0.00000000138:238:37:42- Raw architecture: Response_reg:5:3.93e-26:117:113:111#HTH_AraC:147:0.00000000589:188:42:42#HTH_AraC:202:0.00000000138:238:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875705::NZ_WWSG01000014.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43829-44554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_13540RefSeq proteinWP_118310082.1
Context group ID
GCF_009875705::NZ_WWSG01000014.1::G00005Context members
GT580_RS13505
Partner locus tags
GT580_RS13505
Partner old locus tags
GT580_13540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118310082.1Primary protein accession used for annex mappings.
UniProt accessionA0A414RZE2Primary UniProt accession resolved in the annex database.
UniProt IDA0A414RZE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS13505Primary locus identifier stored in the genes table.
Old locus tagGT580_13540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000014.1Sequence record reported by the local genomic context database.
Genomic interval43 829-44 554 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 829-44 554 ntGCF_009875705::NZ_WWSG01000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000014.1All displayed genes belong to this local TCS context.
Neighborhood span43 829-44 554 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 829 nt44 554 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT580_RS13505GCF_009875705#GT580_RS13505
RRunclassifiedCurrent focus
43 829-44 554 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473465#DW641_RS12715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867786
Simplified PFAM architecture for RROC_0867786
PFAM domain coverage: 194 / 241 aa (80.5%)
1 aa241 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[5-116] | HTH_AraC[147-188] | HTH_AraC[199-238]
- Domain count: 3
- Matched identifier: RROC_0867786
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_AraC 147-188 ; HTH_AraC 147-188 ; HTH_AraC 199-238 ; HTH_AraC 199-238
Cluster members and taxonomy
Representative gene: GCF_003473465#DW641_RS12715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key