1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:2.2e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS11565
Response regulator OmpR family
Dorea longicatena · GCF_009875705
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS11565Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:3.63e-26:223:78:77- Raw architecture: Response_reg:4:2.2e-34:114:111:111#Trans_reg_C:148:3.63e-26:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45256-46973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_11595RefSeq proteinWP_009265522.1
Context group ID
GCF_009875705::NZ_WWSG01000010.1::G00001Context members
GT580_RS11560GT580_RS11565
Partner locus tags
GT580_RS11560GT580_RS11565
Partner old locus tags
GT580_11590GT580_11595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009265522.1Primary protein accession used for annex mappings.
UniProt accessionG2T5F8Primary UniProt accession resolved in the annex database.
UniProt IDG2T5F8_ROSHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS11565Primary locus identifier stored in the genes table.
Old locus tagGT580_11595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000010.1Sequence record reported by the local genomic context database.
Genomic interval46 284-46 973 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 256-46 973 ntGCF_009875705::NZ_WWSG01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000010.1All displayed genes belong to this local TCS context.
Neighborhood span45 256-46 973 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 256 nt46 973 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS11560GCF_009875705#GT580_RS11560
HKClassic
45 256-46 287 nt · Reverse (-)
GT580_RS11565GCF_009875705#GT580_RS11565
RROmpRCurrent focus
46 284-46 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036419255#V3C14_RS19355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0677858
Simplified PFAM architecture for RROC_0677858
PFAM domain coverage: 185 / 256 aa (72.3%)
1 aa256 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[31-140] | Trans_reg_C[175-249]
- Domain count: 2
- Matched identifier: RROC_0677858
- Positioned domains: Response_reg 31-140 ; Trans_reg_C 175-249
Cluster members and taxonomy
Representative gene: GCF_036419255#V3C14_RS19355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key