1 HisKA_3#1
173-234 aa · 62 aa · 16.0% of protein
Raw token
HisKA_3:173:0.00000000000000221:234:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS10775
Histidine kinase, Classic
Dorea longicatena · GCF_009875705
ClassHKTypeClassicLength388 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS10775Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length388 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 388 aa (43.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa388 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
277-382 aa · 106 aa · 27.3% of protein
Raw token
HATPase_c:277:0.0000000259:382:108:109- Raw architecture: HisKA_3:173:0.00000000000000221:234:64:68#HATPase_c:277:0.0000000259:382:108:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000009.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4209-6019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_10805RefSeq proteinWP_161170340.1
Context group ID
GCF_009875705::NZ_WWSG01000009.1::G00046Context members
GT580_RS10770GT580_RS10775
Partner locus tags
GT580_RS10770GT580_RS10775
Partner old locus tags
GT580_10800GT580_10805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161170340.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JYS2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JYS2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS10775Primary locus identifier stored in the genes table.
Old locus tagGT580_10805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000009.1Sequence record reported by the local genomic context database.
Genomic interval4 853-6 019 nt1 167 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 209-6 019 ntGCF_009875705::NZ_WWSG01000009.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000009.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000009.1All displayed genes belong to this local TCS context.
Neighborhood span4 209-6 019 nt1 811 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 209 nt6 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS10770GCF_009875705#GT580_RS10770
RRNarL
4 209-4 856 nt · Reverse (-)
GT580_RS10775GCF_009875705#GT580_RS10775
HKClassicCurrent focus
4 853-6 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS10775The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2544900
Simplified PFAM architecture for HKOC_2544900
PFAM domain coverage: 171 / 388 aa (44.1%)
1 aa388 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[173-235] | HATPase_c[277-384]
- Domain count: 2
- Matched identifier: HKOC_2544900
- Positioned domains: HisKA_3 173-235 ; HATPase_c 277-384
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS10775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key