1 Response_reg#1
5-105 aa · 101 aa · 18.4% of protein
Raw token
Response_reg:5:5.75e-31:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS09815
Response regulator, unclassified
Dorea longicatena · GCF_009875705
ClassRRTypeunclassifiedLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS09815Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage169 / 550 aa (30.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
467-497 aa · 31 aa · 5.6% of protein
Raw token
HTH_AraC:467:0.0000884:497:31:423 HTH_AraC#3
512-548 aa · 37 aa · 6.7% of protein
Raw token
HTH_AraC:512:0.00000000368:548:37:42- Raw architecture: Response_reg:5:5.75e-31:105:102:111#HTH_AraC:467:0.0000884:497:31:42#HTH_AraC:512:0.00000000368:548:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000007.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132618-136000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_09830RefSeq proteinWP_161170301.1
Context group ID
GCF_009875705::NZ_WWSG01000007.1::G00042Context members
GT580_RS09810GT580_RS09815
Partner locus tags
GT580_RS09810GT580_RS09815
Partner old locus tags
GT580_09825GT580_09830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161170301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS09815Primary locus identifier stored in the genes table.
Old locus tagGT580_09830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000007.1Sequence record reported by the local genomic context database.
Genomic interval134 348-136 000 nt1 653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span132 618-136 000 ntGCF_009875705::NZ_WWSG01000007.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000007.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000007.1All displayed genes belong to this local TCS context.
Neighborhood span132 618-136 000 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 618 nt136 000 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS09810GCF_009875705#GT580_RS09810
HKClassic
132 618-134 351 nt · Forward (+)
GT580_RS09815GCF_009875705#GT580_RS09815
RRunclassifiedCurrent focus
134 348-136 000 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS09815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0073968
Simplified PFAM architecture for RROC_0073968
PFAM domain coverage: 187 / 550 aa (34.0%)
1 aa550 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[471-548]
- Domain count: 2
- Matched identifier: RROC_0073968
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 471-548 ; HTH_18 471-548
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS09815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key