1 Response_reg#1
4-96 aa · 93 aa · 36.3% of protein
Raw token
Response_reg:4:0.0000000000000277:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS09015
Response regulator, FrzZ family
Dorea longicatena · GCF_009875705
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875705#GT580_RS09015Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 256 aa (81.3%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
137-251 aa · 115 aa · 44.9% of protein
Raw token
Response_reg:137:0.00000000928:251:115:111- Raw architecture: Response_reg:4:0.0000000000000277:96:93:111#Response_reg:137:0.00000000928:251:115:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875705::NZ_WWSG01000006.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span180069-180839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_09035RefSeq proteinWP_154252855.1
Context group ID
GCF_009875705::NZ_WWSG01000006.1::G00037Context members
GT580_RS09015
Partner locus tags
GT580_RS09015
Partner old locus tags
GT580_09035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154252855.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GV94Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GV94_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS09015Primary locus identifier stored in the genes table.
Old locus tagGT580_09035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000006.1Sequence record reported by the local genomic context database.
Genomic interval180 069-180 839 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span180 069-180 839 ntGCF_009875705::NZ_WWSG01000006.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000006.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span180 069-180 839 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 069 nt180 839 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT580_RS09015GCF_009875705#GT580_RS09015
RRFrzZCurrent focus
180 069-180 839 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679895#GKD92_RS15510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0675355
Simplified PFAM architecture for RROC_0675355
PFAM domain coverage: 214 / 256 aa (83.6%)
1 aa256 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[4-102] | Response_reg[137-251]
- Domain count: 2
- Matched identifier: RROC_0675355
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Response_reg 137-251 ; Response_reg 137-251
Cluster members and taxonomy
Representative gene: GCF_009679895#GKD92_RS15510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key