1 Response_reg#1
6-114 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:6:1.92e-25:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS08145
Response regulator, unclassified
Dorea longicatena · GCF_009875705
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS08145Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage173 / 532 aa (32.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
445-479 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:445:0.000000472:479:35:423 HTH_AraC#3
500-528 aa · 29 aa · 5.5% of protein
Raw token
HTH_AraC:500:0.000000504:528:29:42- Raw architecture: Response_reg:6:1.92e-25:114:109:111#HTH_AraC:445:0.000000472:479:35:42#HTH_AraC:500:0.000000504:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000006.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16948-20425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_08160RefSeq proteinWP_161144188.1
Context group ID
GCF_009875705::NZ_WWSG01000006.1::G00034Context members
GT580_RS08140GT580_RS08145
Partner locus tags
GT580_RS08140GT580_RS08145
Partner old locus tags
GT580_08155GT580_08160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161144188.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JW21Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JW21_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS08145Primary locus identifier stored in the genes table.
Old locus tagGT580_08160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000006.1Sequence record reported by the local genomic context database.
Genomic interval18 827-20 425 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 948-20 425 ntGCF_009875705::NZ_WWSG01000006.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000006.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span16 948-20 425 nt3 478 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 948 nt20 425 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS08140GCF_009875705#GT580_RS08140
HKClassic
16 948-18 813 nt · Reverse (-)
GT580_RS08145GCF_009875705#GT580_RS08145
RRunclassifiedCurrent focus
18 827-20 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875615#GT508_RS10595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108438
Simplified PFAM architecture for RROC_0108438
PFAM domain coverage: 319 / 532 aa (60.0%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[164-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0108438
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 164-291 ; GGDEF_2 164-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_009875615#GT508_RS10595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key