1 dCache_1#1
102-292 aa · 191 aa · 30.8% of protein
Raw token
dCache_1:102:0.00000000000000218:292:197:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS08140
Histidine kinase, Classic
Dorea longicatena · GCF_009875705
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS08140Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage379 / 621 aa (61.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-471 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:392:9.18e-34:471:80:803 HATPase_c#3
487-594 aa · 108 aa · 17.4% of protein
Raw token
HATPase_c:487:1.77e-16:594:111:109- Raw architecture: dCache_1:102:0.00000000000000218:292:197:195#His_kinase:392:9.18e-34:471:80:80#HATPase_c:487:1.77e-16:594:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000006.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16948-20425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_08155RefSeq proteinWP_161170208.1
Context group ID
GCF_009875705::NZ_WWSG01000006.1::G00034Context members
GT580_RS08140GT580_RS08145
Partner locus tags
GT580_RS08140GT580_RS08145
Partner old locus tags
GT580_08155GT580_08160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161170208.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JW50Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JW50_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS08140Primary locus identifier stored in the genes table.
Old locus tagGT580_08155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000006.1Sequence record reported by the local genomic context database.
Genomic interval16 948-18 813 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 948-20 425 ntGCF_009875705::NZ_WWSG01000006.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000006.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span16 948-20 425 nt3 478 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 948 nt20 425 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS08140GCF_009875705#GT580_RS08140
HKClassicCurrent focus
16 948-18 813 nt · Reverse (-)
GT580_RS08145GCF_009875705#GT580_RS08145
RRunclassified
18 827-20 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS08140The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970960
Simplified PFAM architecture for HKOC_0970960
PFAM domain coverage: 414 / 621 aa (66.7%)
1 aa621 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[66-291] | His_kinase[392-471] | HATPase_c[488-595]
- Domain count: 3
- Matched identifier: HKOC_0970960
- Positioned domains: dCache_1 66-291 ; His_kinase 392-471 ; HATPase_c 488-595
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS08140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key