1 Response_reg#1
6-119 aa · 114 aa · 21.0% of protein
Raw token
Response_reg:6:2.62e-30:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS07580
Response regulator, unclassified
Dorea longicatena · GCF_009875705
ClassRRTypeunclassifiedLength543 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS07580Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length543 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 543 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa543 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
452-489 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:452:0.000000000371:489:38:423 HTH_AraC#3
501-538 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:501:0.00000095:538:38:42- Raw architecture: Response_reg:6:2.62e-30:119:114:111#HTH_AraC:452:0.000000000371:489:38:42#HTH_AraC:501:0.00000095:538:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000005.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120129-123251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_07595RefSeq proteinWP_161170175.1
Context group ID
GCF_009875705::NZ_WWSG01000005.1::G00031Context members
GT580_RS07580GT580_RS07585
Partner locus tags
GT580_RS07580GT580_RS07585
Partner old locus tags
GT580_07595GT580_07600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161170175.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JWU5Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JWU5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS07580Primary locus identifier stored in the genes table.
Old locus tagGT580_07595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000005.1Sequence record reported by the local genomic context database.
Genomic interval120 129-121 760 nt1 632 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span120 129-123 251 ntGCF_009875705::NZ_WWSG01000005.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000005.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span120 129-123 251 nt3 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 129 nt123 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS07580GCF_009875705#GT580_RS07580
RRunclassifiedCurrent focus
120 129-121 760 nt · Forward (+)
GT580_RS07585GCF_009875705#GT580_RS07585
HKClassic
121 764-123 251 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS07580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0084242
Simplified PFAM architecture for RROC_0084242
PFAM domain coverage: 193 / 543 aa (35.5%)
1 aa543 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[461-540]
- Domain count: 2
- Matched identifier: RROC_0084242
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; HTH_18 461-540 ; HTH_18 461-540
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS07580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key