1 Response_reg#1
6-121 aa · 116 aa · 44.3% of protein
Raw token
Response_reg:6:3.68e-20:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS04710
Response regulator Spo0A family
Dorea longicatena · GCF_009875705
ClassRRTypeSpo0ALength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875705#GT580_RS04710Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 262 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
152-255 aa · 104 aa · 39.7% of protein
Raw token
Spo0A_C:152:6.26e-64:255:104:104- Raw architecture: Response_reg:6:3.68e-20:121:116:111#Spo0A_C:152:6.26e-64:255:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875705::NZ_WWSG01000003.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span136245-137033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_04715RefSeq proteinWP_055193782.1
Context group ID
GCF_009875705::NZ_WWSG01000003.1::G00026Context members
GT580_RS04710
Partner locus tags
GT580_RS04710
Partner old locus tags
GT580_04715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055193782.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YAB6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YAB6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS04710Primary locus identifier stored in the genes table.
Old locus tagGT580_04715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000003.1Sequence record reported by the local genomic context database.
Genomic interval136 245-137 033 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 245-137 033 ntGCF_009875705::NZ_WWSG01000003.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000003.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span136 245-137 033 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 245 nt137 033 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT580_RS04710GCF_009875705#GT580_RS04710
RRSpo0ACurrent focus
136 245-137 033 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404635#AQ990_RS03070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644586
Simplified PFAM architecture for RROC_0644586
PFAM domain coverage: 219 / 262 aa (83.6%)
1 aa262 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[152-255]
- Domain count: 2
- Matched identifier: RROC_0644586
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 152-255 ; Spo0A_C 152-255
Cluster members and taxonomy
Representative gene: GCF_001404635#AQ990_RS03070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key