1 Response_reg#1
4-117 aa · 114 aa · 47.9% of protein
Raw token
Response_reg:4:0.00000000000239:117:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS04475
Response regulator LytTR family
Dorea longicatena · GCF_009875705
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875705#GT580_RS04475Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 238 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-231 aa · 87 aa · 36.6% of protein
Raw token
LytTR:145:0.000000000525:231:92:98- Raw architecture: Response_reg:4:0.00000000000239:117:116:111#LytTR:145:0.000000000525:231:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875705::NZ_WWSG01000003.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span84443-85159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_04480RefSeq proteinWP_161169959.1
Context group ID
GCF_009875705::NZ_WWSG01000003.1::G00025Context members
GT580_RS04475
Partner locus tags
GT580_RS04475
Partner old locus tags
GT580_04480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161169959.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JTV2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JTV2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS04475Primary locus identifier stored in the genes table.
Old locus tagGT580_04480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000003.1Sequence record reported by the local genomic context database.
Genomic interval84 443-85 159 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 443-85 159 ntGCF_009875705::NZ_WWSG01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span84 443-85 159 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 443 nt85 159 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT580_RS04475GCF_009875705#GT580_RS04475
RRLytTRCurrent focus
84 443-85 159 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS04475The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0943475
Simplified PFAM architecture for RROC_0943475
PFAM domain coverage: 199 / 238 aa (83.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[144-230]
- Domain count: 2
- Matched identifier: RROC_0943475
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 144-230 ; LytTR 144-230
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS04475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key