1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.0000000000355:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS04425
Histidine kinase, Classic
Dorea longicatena · GCF_009875705
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875705#GT580_RS04425Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 386 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.000000000107:230:67:643 HATPase_c#3
272-381 aa · 110 aa · 28.5% of protein
Raw token
HATPase_c:272:3.51e-32:381:110:109- Raw architecture: HAMP:89:0.0000000000355:159:71:69#HisKA:164:0.000000000107:230:67:64#HATPase_c:272:3.51e-32:381:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875705::NZ_WWSG01000003.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74143-75986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_04430RefSeq proteinWP_161169952.1
Context group ID
GCF_009875705::NZ_WWSG01000003.1::G00024Context members
GT580_RS04425GT580_RS04430
Partner locus tags
GT580_RS04425GT580_RS04430
Partner old locus tags
GT580_04430GT580_04435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161169952.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JTU0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JTU0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS04425Primary locus identifier stored in the genes table.
Old locus tagGT580_04430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000003.1Sequence record reported by the local genomic context database.
Genomic interval74 143-75 303 nt1 161 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 143-75 986 ntGCF_009875705::NZ_WWSG01000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span74 143-75 986 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 143 nt75 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT580_RS04425GCF_009875705#GT580_RS04425
HKClassicCurrent focus
74 143-75 303 nt · Reverse (-)
GT580_RS04430GCF_009875705#GT580_RS04430
RROmpR
75 303-75 986 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS04425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2559659
Simplified PFAM architecture for HKOC_2559659
PFAM domain coverage: 174 / 386 aa (45.1%)
1 aa386 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-229] | HATPase_c[275-382]
- Domain count: 2
- Matched identifier: HKOC_2559659
- Positioned domains: HisKA 164-229 ; HATPase_c 275-382
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS04425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key