1 HisKA#1
131-194 aa · 64 aa · 18.1% of protein
Raw token
HisKA:131:0.000000000000133:194:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS01550
Histidine kinase, Classic
Dorea longicatena · GCF_009875705
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875705#GT580_RS01550Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 354 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-352 aa · 110 aa · 31.1% of protein
Raw token
HATPase_c:243:2.18e-25:352:112:109- Raw architecture: HisKA:131:0.000000000000133:194:64:64#HATPase_c:243:2.18e-25:352:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875705::NZ_WWSG01000001.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span308475-309539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_01550RefSeq proteinWP_003505357.1
Context group ID
GCF_009875705::NZ_WWSG01000001.1::G00015Context members
GT580_RS01550
Partner locus tags
GT580_RS01550
Partner old locus tags
GT580_01550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003505357.1Primary protein accession used for annex mappings.
UniProt accessionE7GUN5Primary UniProt accession resolved in the annex database.
UniProt IDE7GUN5_CLOS6Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS01550Primary locus identifier stored in the genes table.
Old locus tagGT580_01550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000001.1Sequence record reported by the local genomic context database.
Genomic interval308 475-309 539 nt1 065 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span308 475-309 539 ntGCF_009875705::NZ_WWSG01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span308 475-309 539 nt1 065 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 475 nt309 539 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT580_RS01550GCF_009875705#GT580_RS01550
HKClassicCurrent focus
308 475-309 539 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS05290Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2779216
Simplified PFAM architecture for HKOC_2779216
PFAM domain coverage: 174 / 354 aa (49.2%)
1 aa354 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[132-195] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2779216
- Positioned domains: HisKA 132-195 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS05290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key