1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:1.71e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT580_RS01540
Response regulator OmpR family
Dorea longicatena · GCF_009875705
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875705#GT580_RS01540Stable P2CS identifier used across views.
GenomeGCF_009875705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.8% of protein
Raw token
Trans_reg_C:154:6.88e-32:231:78:77- Raw architecture: Response_reg:5:1.71e-34:114:111:111#Trans_reg_C:154:6.88e-32:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875705::NZ_WWSG01000001.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span307240-307935Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT580_01540RefSeq proteinWP_003505360.1
Context group ID
GCF_009875705::NZ_WWSG01000001.1::G00014Context members
GT580_RS01540
Partner locus tags
GT580_RS01540
Partner old locus tags
GT580_01540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003505360.1Primary protein accession used for annex mappings.
UniProt accessionE7GUN7Primary UniProt accession resolved in the annex database.
UniProt IDE7GUN7_CLOS6Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT580_RS01540Primary locus identifier stored in the genes table.
Old locus tagGT580_01540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSG01000001.1Sequence record reported by the local genomic context database.
Genomic interval307 240-307 935 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span307 240-307 935 ntGCF_009875705::NZ_WWSG01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875705::NZ_WWSG01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span307 240-307 935 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
307 240 nt307 935 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT580_RS01540GCF_009875705#GT580_RS01540
RROmpRCurrent focus
307 240-307 935 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS05280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158300
Simplified PFAM architecture for RROC_1158300
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1158300
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS05280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875705
AssemblyASM987570v1 · Contighaploid
Genome composition3 311 183 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 82 · HK 39 · RR 43CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key