1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.0000188:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT565_RS09490
Histidine kinase, Classic
Dorea longicatena · GCF_009875635
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875635#GT565_RS09490Stable P2CS identifier used across views.
GenomeGCF_009875635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 343 aa (51.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-343 aa · 109 aa · 31.8% of protein
Raw token
HATPase_c:235:7.36e-29:343:109:109- Raw architecture: HisKA:124:0.0000188:189:66:64#HATPase_c:235:7.36e-29:343:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875635::NZ_WWSB01000011.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52133-53844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT565_09525RefSeq proteinWP_155131841.1
Context group ID
GCF_009875635::NZ_WWSB01000011.1::G00001Context members
GT565_RS09485GT565_RS09490
Partner locus tags
GT565_RS09485GT565_RS09490
Partner old locus tags
GT565_09520GT565_09525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155131841.1Primary protein accession used for annex mappings.
UniProt accessionA0A845KNQ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A845KNQ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT565_RS09490Primary locus identifier stored in the genes table.
Old locus tagGT565_09525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSB01000011.1Sequence record reported by the local genomic context database.
Genomic interval52 813-53 844 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 133-53 844 ntGCF_009875635::NZ_WWSB01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875635::NZ_WWSB01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSB01000011.1All displayed genes belong to this local TCS context.
Neighborhood span52 133-53 844 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 133 nt53 844 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT565_RS09485GCF_009875635#GT565_RS09485
RROmpR
52 133-52 816 nt · Forward (+)
GT565_RS09490GCF_009875635#GT565_RS09490
HKClassicCurrent focus
52 813-53 844 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875635#GT565_RS09490The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2829347
Simplified PFAM architecture for HKOC_2829347
PFAM domain coverage: 108 / 343 aa (31.5%)
1 aa343 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[235-342]
- Domain count: 1
- Matched identifier: HKOC_2829347
- Positioned domains: HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_009875635#GT565_RS09490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875635
AssemblyASM987563v1 · Contighaploid
Genome composition2 986 642 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 67 · HK 33 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key