1 Response_reg#1
5-111 aa · 107 aa · 48.4% of protein
Raw token
Response_reg:5:3.35e-26:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT565_RS07195
Response regulator OmpR family
Dorea longicatena · GCF_009875635
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875635#GT565_RS07195Stable P2CS identifier used across views.
GenomeGCF_009875635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 221 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
141-218 aa · 78 aa · 35.3% of protein
Raw token
Trans_reg_C:141:1.37e-31:218:78:77- Raw architecture: Response_reg:5:3.35e-26:111:109:111#Trans_reg_C:141:1.37e-31:218:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875635::NZ_WWSB01000007.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41355-42998Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT565_07220RefSeq proteinWP_161159122.1
Context group ID
GCF_009875635::NZ_WWSB01000007.1::G00033Context members
GT565_RS07195GT565_RS07200
Partner locus tags
GT565_RS07195GT565_RS07200
Partner old locus tags
GT565_07220GT565_07225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161159122.1Primary protein accession used for annex mappings.
UniProt accessionA0A845KL38Primary UniProt accession resolved in the annex database.
UniProt IDA0A845KL38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT565_RS07195Primary locus identifier stored in the genes table.
Old locus tagGT565_07220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSB01000007.1Sequence record reported by the local genomic context database.
Genomic interval41 355-42 020 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 355-42 998 ntGCF_009875635::NZ_WWSB01000007.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875635::NZ_WWSB01000007.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSB01000007.1All displayed genes belong to this local TCS context.
Neighborhood span41 355-42 998 nt1 644 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 355 nt42 998 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT565_RS07195GCF_009875635#GT565_RS07195
RROmpRCurrent focus
41 355-42 020 nt · Forward (+)
GT565_RS07200GCF_009875635#GT565_RS07200
HKClassic
42 057-42 998 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875635#GT565_RS07195The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1691715
Simplified PFAM architecture for RROC_1691715
PFAM domain coverage: 186 / 221 aa (84.2%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[141-218]
- Domain count: 2
- Matched identifier: RROC_1691715
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 141-218 ; Trans_reg_C 141-218
Cluster members and taxonomy
Representative gene: GCF_009875635#GT565_RS07195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875635
AssemblyASM987563v1 · Contighaploid
Genome composition2 986 642 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 67 · HK 33 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key