1 HisKA#1
85-154 aa · 70 aa · 22.6% of protein
Raw token
HisKA:85:0.0000000000342:154:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT565_RS07005
Histidine kinase, Classic
Dorea longicatena · GCF_009875635
ClassHKTypeClassicLength310 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875635#GT565_RS07005Stable P2CS identifier used across views.
GenomeGCF_009875635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 310 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa310 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-305 aa · 106 aa · 34.2% of protein
Raw token
HATPase_c:200:3.66e-27:305:107:109- Raw architecture: HisKA:85:0.0000000000342:154:70:64#HATPase_c:200:3.66e-27:305:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875635::NZ_WWSB01000006.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140995-142713Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT565_07030RefSeq proteinWP_161159099.1
Context group ID
GCF_009875635::NZ_WWSB01000006.1::G00032Context members
GT565_RS07005GT565_RS07010
Partner locus tags
GT565_RS07005GT565_RS07010
Partner old locus tags
GT565_07030GT565_07035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161159099.1Primary protein accession used for annex mappings.
UniProt accessionA0A845KKQ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A845KKQ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT565_RS07005Primary locus identifier stored in the genes table.
Old locus tagGT565_07030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSB01000006.1Sequence record reported by the local genomic context database.
Genomic interval140 995-141 927 nt933 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 995-142 713 ntGCF_009875635::NZ_WWSB01000006.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875635::NZ_WWSB01000006.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSB01000006.1All displayed genes belong to this local TCS context.
Neighborhood span140 995-142 713 nt1 719 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 995 nt142 713 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT565_RS07005GCF_009875635#GT565_RS07005
HKClassicCurrent focus
140 995-141 927 nt · Reverse (-)
GT565_RS07010GCF_009875635#GT565_RS07010
RROmpR
141 928-142 713 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875635#GT565_RS07005The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2878858
Simplified PFAM architecture for HKOC_2878858
PFAM domain coverage: 175 / 310 aa (56.5%)
1 aa310 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-154] | HATPase_c[201-306]
- Domain count: 2
- Matched identifier: HKOC_2878858
- Positioned domains: HisKA 86-154 ; HATPase_c 201-306
Cluster members and taxonomy
Representative gene: GCF_009875635#GT565_RS07005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875635
AssemblyASM987563v1 · Contighaploid
Genome composition2 986 642 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 67 · HK 33 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key