1 HisKA_3#1
243-304 aa · 62 aa · 7.1% of protein
Raw token
HisKA_3:243:1.68e-17:304:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GN236_RS03935
Histidine kinase, Classic
Bifidobacterium longum · GCF_009738515
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009738515#GN236_RS03935Stable P2CS identifier used across views.
GenomeGCF_009738515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 869 aa (17.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa869 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.00000000000186:439:104:109- Raw architecture: HisKA_3:243:1.68e-17:304:62:68#HATPase_c:353:0.00000000000186:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009738515::NZ_CP046514.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span910841-914272Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGN236_03935RefSeq proteinWP_197272307.1
Context group ID
GCF_009738515::NZ_CP046514.1::G00005Context members
GN236_RS03930GN236_RS03935
Partner locus tags
GN236_RS03930GN236_RS03935
Partner old locus tags
GN236_03930GN236_03935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197272307.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGN236_RS03935Primary locus identifier stored in the genes table.
Old locus tagGN236_03935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP046514.1Sequence record reported by the local genomic context database.
Genomic interval911 663-914 272 nt2 610 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span910 841-914 272 ntGCF_009738515::NZ_CP046514.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009738515::NZ_CP046514.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP046514.1All displayed genes belong to this local TCS context.
Neighborhood span910 841-914 272 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
910 841 nt914 272 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GN236_RS03930GCF_009738515#GN236_RS03930
RRNarL
910 841-911 587 nt · Reverse (-)
GN236_RS03935GCF_009738515#GN236_RS03935
HKClassicCurrent focus
911 663-914 272 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009738515#GN236_RS03935The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0459972
Simplified PFAM architecture for HKOC_0459972
PFAM domain coverage: 421 / 869 aa (48.4%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[243-304] | HATPase_c[353-440] | DUF7134[554-686]
- Domain count: 4
- Matched identifier: HKOC_0459972
- Positioned domains: DUF7134 10-147 ; HisKA_3 243-304 ; HATPase_c 353-440 ; DUF7134 554-686
Cluster members and taxonomy
Representative gene: GCF_009738515#GN236_RS03935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_009738515
AssemblyASM973851v1 · Complete Genomehaploid
Genome composition2 258 667 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key