1 HisKA#1
618-683 aa · 66 aa · 7.8% of protein
Raw token
HisKA:618:6.47e-18:683:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD30_RS01200
Histidine kinase, Classic
Roseburia faecis · GCF_009718425
ClassHKTypeClassicLength843 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718425#GMD30_RS01200Stable P2CS identifier used across views.
GenomeGCF_009718425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length843 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 843 aa (18.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa843 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
730-821 aa · 92 aa · 10.9% of protein
Raw token
HATPase_c:730:4.03e-17:821:96:109- Raw architecture: HisKA:618:6.47e-18:683:66:64#HATPase_c:730:4.03e-17:821:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718425::NZ_WNAL01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17359-20581Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD30_01200RefSeq proteinWP_155175091.1
Context group ID
GCF_009718425::NZ_WNAL01000002.1::G00019Context members
GMD30_RS01200GMD30_RS01205
Partner locus tags
GMD30_RS01200GMD30_RS01205
Partner old locus tags
GMD30_01200GMD30_01205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155175091.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KIS1Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KIS1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD30_RS01200Primary locus identifier stored in the genes table.
Old locus tagGMD30_01200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAL01000002.1Sequence record reported by the local genomic context database.
Genomic interval17 359-19 890 nt2 532 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 359-20 581 ntGCF_009718425::NZ_WNAL01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718425::NZ_WNAL01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span17 359-20 581 nt3 223 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 359 nt20 581 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD30_RS01200GCF_009718425#GMD30_RS01200
HKClassicCurrent focus
17 359-19 890 nt · Reverse (-)
GMD30_RS01205GCF_009718425#GMD30_RS01205
RROmpR
19 883-20 581 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS01200Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0504124
Simplified PFAM architecture for HKOC_0504124
PFAM domain coverage: 158 / 843 aa (18.7%)
1 aa843 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[618-682] | HATPase_c[730-822]
- Domain count: 2
- Matched identifier: HKOC_0504124
- Positioned domains: HisKA 618-682 ; HATPase_c 730-822
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS01200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718425
AssemblyASM971842v1 · Scaffoldhaploid
Genome composition3 596 207 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key