1 Response_reg#1
15-127 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:15:3.32e-26:127:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ31_RS07745
Response regulator NarL family
Bifidobacterium sp. WCA-178-WT-4B · GCF_009696495
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696495#FYJ31_RS07745Stable P2CS identifier used across views.
GenomeGCF_009696495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 231 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:167:5.52e-18:224:58:58- Raw architecture: Response_reg:15:3.32e-26:127:113:111#HTH_LUXR:167:5.52e-18:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696495::NZ_VULV01000009.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99831-101698Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ31_07885RefSeq proteinWP_154536414.1
Context group ID
GCF_009696495::NZ_VULV01000009.1::G00020Context members
FYJ31_RS07740FYJ31_RS07745
Partner locus tags
FYJ31_RS07740FYJ31_RS07745
Partner old locus tags
FYJ31_07880FYJ31_07885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_154536414.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ31_RS07745Primary locus identifier stored in the genes table.
Old locus tagFYJ31_07885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VULV01000009.1Sequence record reported by the local genomic context database.
Genomic interval101 003-101 698 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 831-101 698 ntGCF_009696495::NZ_VULV01000009.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696495::NZ_VULV01000009.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VULV01000009.1All displayed genes belong to this local TCS context.
Neighborhood span99 831-101 698 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 831 nt101 698 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ31_RS07740GCF_009696495#FYJ31_RS07740
HKClassic
99 831-101 009 nt · Forward (+)
FYJ31_RS07745GCF_009696495#FYJ31_RS07745
RRNarLCurrent focus
101 003-101 698 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696495#FYJ31_RS07745The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1171705
Simplified PFAM architecture for RROC_1171705
PFAM domain coverage: 168 / 231 aa (72.7%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-127] | GerE[170-224]
- Domain count: 2
- Matched identifier: RROC_1171705
- Positioned domains: Response_reg 15-127 ; Response_reg 15-127 ; GerE 170-224 ; GerE 170-224
Cluster members and taxonomy
Representative gene: GCF_009696495#FYJ31_RS07745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 605 776 · GCF_009696495
AssemblyASM969649v1 · Contighaploid
Genome composition2 696 243 bp · 59,5% GCBifidobacterium sp. WCA-178-WT-4B
Signal transduction countsGenes 36 · HK 12 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key