1 Response_reg#1
4-121 aa · 118 aa · 47.8% of protein
Raw token
Response_reg:4:3.38e-25:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ31_RS07620
Response regulator NarL family
Bifidobacterium sp. WCA-178-WT-4B · GCF_009696495
ClassRRTypeNarLLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696495#FYJ31_RS07620Stable P2CS identifier used across views.
GenomeGCF_009696495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 247 aa (70.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-215 aa · 56 aa · 22.7% of protein
Raw token
HTH_LUXR:160:0.0000000000000232:215:56:58- Raw architecture: Response_reg:4:3.38e-25:121:118:111#HTH_LUXR:160:0.0000000000000232:215:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696495::NZ_VULV01000009.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span70483-71226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ31_07755RefSeq proteinWP_012576883.1
Context group ID
GCF_009696495::NZ_VULV01000009.1::G00019Context members
FYJ31_RS07620
Partner locus tags
FYJ31_RS07620
Partner old locus tags
FYJ31_07755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576883.1Primary protein accession used for annex mappings.
UniProt accessionB7GNX3Primary UniProt accession resolved in the annex database.
UniProt IDB7GNX3_BIFLSDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ31_RS07620Primary locus identifier stored in the genes table.
Old locus tagFYJ31_07755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VULV01000009.1Sequence record reported by the local genomic context database.
Genomic interval70 483-71 226 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 483-71 226 ntGCF_009696495::NZ_VULV01000009.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696495::NZ_VULV01000009.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VULV01000009.1All displayed genes belong to this local TCS context.
Neighborhood span70 483-71 226 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 483 nt71 226 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ31_RS07620GCF_009696495#FYJ31_RS07620
RRNarLCurrent focus
70 483-71 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02425Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0756335
Simplified PFAM architecture for RROC_0756335
PFAM domain coverage: 171 / 247 aa (69.2%)
1 aa247 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[163-215]
- Domain count: 2
- Matched identifier: RROC_0756335
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 163-215 ; GerE 163-215
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 605 776 · GCF_009696495
AssemblyASM969649v1 · Contighaploid
Genome composition2 696 243 bp · 59,5% GCBifidobacterium sp. WCA-178-WT-4B
Signal transduction countsGenes 36 · HK 12 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key