1 Response_reg#1
4-111 aa · 108 aa · 48.9% of protein
Raw token
Response_reg:4:2.13e-30:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ31_RS02760
Response regulator OmpR family
Bifidobacterium sp. WCA-178-WT-4B · GCF_009696495
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696495#FYJ31_RS02760Stable P2CS identifier used across views.
GenomeGCF_009696495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 221 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 33.9% of protein
Raw token
Trans_reg_C:144:1.05e-23:218:77:77- Raw architecture: Response_reg:4:2.13e-30:111:111:111#Trans_reg_C:144:1.05e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696495::NZ_VULV01000002.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220342-222356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ31_02805RefSeq proteinWP_154535909.1
Context group ID
GCF_009696495::NZ_VULV01000002.1::G00008Context members
FYJ31_RS02760FYJ31_RS02765
Partner locus tags
FYJ31_RS02760FYJ31_RS02765
Partner old locus tags
FYJ31_02805FYJ31_02810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154535909.1Primary protein accession used for annex mappings.
UniProt accessionA0A8U0LGD7Primary UniProt accession resolved in the annex database.
UniProt IDA0A8U0LGD7_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ31_RS02760Primary locus identifier stored in the genes table.
Old locus tagFYJ31_02805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VULV01000002.1Sequence record reported by the local genomic context database.
Genomic interval220 342-221 007 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span220 342-222 356 ntGCF_009696495::NZ_VULV01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696495::NZ_VULV01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VULV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span220 342-222 356 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 342 nt222 356 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ31_RS02760GCF_009696495#FYJ31_RS02760
RROmpRCurrent focus
220 342-221 007 nt · Forward (+)
FYJ31_RS02765GCF_009696495#FYJ31_RS02765
HKClassic
221 067-222 356 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696495#FYJ31_RS02760The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1691277
Simplified PFAM architecture for RROC_1691277
PFAM domain coverage: 181 / 221 aa (81.9%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1691277
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_009696495#FYJ31_RS02760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 605 776 · GCF_009696495
AssemblyASM969649v1 · Contighaploid
Genome composition2 696 243 bp · 59,5% GCBifidobacterium sp. WCA-178-WT-4B
Signal transduction countsGenes 36 · HK 12 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key