1 Response_reg#1
3-103 aa · 101 aa · 46.1% of protein
Raw token
Response_reg:3:2.95e-22:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BKKJ1_RS07630
Response regulator NarL family
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_009684555
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009684555#BKKJ1_RS07630Stable P2CS identifier used across views.
GenomeGCF_009684555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 219 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:1.29e-21:213:56:58- Raw architecture: Response_reg:3:2.95e-22:103:101:111#HTH_LUXR:158:1.29e-21:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009684555::NZ_CP026729.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1659307-1661288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBKKJ1_1507RefSeq proteinWP_033500606.1
Context group ID
GCF_009684555::NZ_CP026729.1::G00011Context members
BKKJ1_RS07630BKKJ1_RS07635
Partner locus tags
BKKJ1_RS07630BKKJ1_RS07635
Partner old locus tags
BKKJ1_1507BKKJ1_1508
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033500606.1Primary protein accession used for annex mappings.
UniProt accessionA0AA43P7I4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA43P7I4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBKKJ1_RS07630Primary locus identifier stored in the genes table.
Old locus tagBKKJ1_1507Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP026729.1Sequence record reported by the local genomic context database.
Genomic interval1 659 307-1 659 966 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 659 307-1 661 288 ntGCF_009684555::NZ_CP026729.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009684555::NZ_CP026729.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP026729.1All displayed genes belong to this local TCS context.
Neighborhood span1 659 307-1 661 288 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 659 307 nt1 661 288 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BKKJ1_RS07630GCF_009684555#BKKJ1_RS07630
RRNarLCurrent focus
1 659 307-1 659 966 nt · Reverse (-)
BKKJ1_RS07635GCF_009684555#BKKJ1_RS07635
HKClassic
1 659 966-1 661 288 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741605#BKAS_RS00545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1770693
Simplified PFAM architecture for RROC_1770693
PFAM domain coverage: 156 / 219 aa (71.2%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1770693
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_000741605#BKAS_RS00545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_009684555
AssemblyASM968455v1 · Complete Genomehaploid
Genome composition2 445 409 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key