1 H_kinase_N#1
10-145 aa · 136 aa · 27.6% of protein
Raw token
H_kinase_N:10:2.79e-48:145:137:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BKKJ1_RS04405
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_009684555
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009684555#BKKJ1_RS04405Stable P2CS identifier used across views.
GenomeGCF_009684555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 492 aa (83.9%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation4 items
2 PAS_4#2
175-278 aa · 104 aa · 21.1% of protein
Raw token
PAS_4:175:0.0000000011:278:109:1103 HisKA_2#3
292-361 aa · 70 aa · 14.2% of protein
Raw token
HisKA_2:292:1.32e-29:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.9% of protein
Raw token
HATPase_c:388:1.13e-16:490:112:109- Raw architecture: H_kinase_N:10:2.79e-48:145:137:139#PAS_4:175:0.0000000011:278:109:110#HisKA_2:292:1.32e-29:361:71:76#HATPase_c:388:1.13e-16:490:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009684555::NZ_CP026729.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span955338-956816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBKKJ1_0852RefSeq proteinWP_193564522.1
Context group ID
GCF_009684555::NZ_CP026729.1::G00007Context members
BKKJ1_RS04405
Partner locus tags
BKKJ1_RS04405
Partner old locus tags
BKKJ1_0852
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193564522.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBKKJ1_RS04405Primary locus identifier stored in the genes table.
Old locus tagBKKJ1_0852Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP026729.1Sequence record reported by the local genomic context database.
Genomic interval955 338-956 816 nt1 479 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span955 338-956 816 ntGCF_009684555::NZ_CP026729.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009684555::NZ_CP026729.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP026729.1All displayed genes belong to this local TCS context.
Neighborhood span955 338-956 816 nt1 479 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
955 338 nt956 816 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BKKJ1_RS04405GCF_009684555#BKKJ1_RS04405
HKClassicCurrent focus
955 338-956 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009684555#BKKJ1_RS04405The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1522896
Simplified PFAM architecture for HKOC_1522896
PFAM domain coverage: 416 / 492 aa (84.6%)
1 aa492 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[174-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1522896
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 174-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_009684555#BKKJ1_RS04405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_009684555
AssemblyASM968455v1 · Complete Genomehaploid
Genome composition2 445 409 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key