1 Response_reg#1
5-116 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:5:3.02e-30:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD69_RS00845
Response regulator OmpR family
Agathobacter rectalis · GCF_009680175
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009680175#GKD69_RS00845Stable P2CS identifier used across views.
GenomeGCF_009680175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 233 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-228 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:151:3.03e-27:228:78:77- Raw architecture: Response_reg:5:3.02e-30:116:112:111#Trans_reg_C:151:3.03e-27:228:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009680175::NZ_WKQO01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191940-193867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD69_00845RefSeq proteinWP_006857257.1
Context group ID
GCF_009680175::NZ_WKQO01000001.1::G00012Context members
GKD69_RS00845GKD69_RS00850
Partner locus tags
GKD69_RS00845GKD69_RS00850
Partner old locus tags
GKD69_00845GKD69_00850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857257.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AB11Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AB11_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD69_RS00845Primary locus identifier stored in the genes table.
Old locus tagGKD69_00845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQO01000001.1Sequence record reported by the local genomic context database.
Genomic interval191 940-192 641 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 940-193 867 ntGCF_009680175::NZ_WKQO01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009680175::NZ_WKQO01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span191 940-193 867 nt1 928 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 940 nt193 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD69_RS00845GCF_009680175#GKD69_RS00845
RROmpRCurrent focus
191 940-192 641 nt · Forward (+)
GKD69_RS00850GCF_009680175#GKD69_RS00850
HKClassic
192 638-193 867 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS09600Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080818
Simplified PFAM architecture for RROC_1080818
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-116] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1080818
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS09600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_009680175
AssemblyASM968017v1 · Scaffoldhaploid
Genome composition2 906 017 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 68 · HK 32 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key