1 Response_reg#1
3-102 aa · 100 aa · 42.0% of protein
Raw token
Response_reg:3:0.000000000000712:102:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKE10_RS03615
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_009680085
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009680085#GKE10_RS03615Stable P2CS identifier used across views.
GenomeGCF_009680085Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 238 aa (69.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-198 aa · 66 aa · 27.7% of protein
Raw token
LytTR:133:0.0000000000000253:198:66:98- Raw architecture: Response_reg:3:0.000000000000712:102:102:111#LytTR:133:0.0000000000000253:198:66:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009680085::NZ_WKQM01000005.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1533-2249Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKE10_03610RefSeq proteinWP_173016268.1
Context group ID
GCF_009680085::NZ_WKQM01000005.1::G00026Context members
GKE10_RS03615
Partner locus tags
GKE10_RS03615
Partner old locus tags
GKE10_03610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173016268.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKE10_RS03615Primary locus identifier stored in the genes table.
Old locus tagGKE10_03610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQM01000005.1Sequence record reported by the local genomic context database.
Genomic interval1 533-2 249 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 533-2 249 ntGCF_009680085::NZ_WKQM01000005.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009680085::NZ_WKQM01000005.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQM01000005.1All displayed genes belong to this local TCS context.
Neighborhood span1 533-2 249 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 533 nt2 249 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKE10_RS03615GCF_009680085#GKE10_RS03615
RRLytTRCurrent focus
1 533-2 249 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009680085#GKE10_RS03615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0943133
Simplified PFAM architecture for RROC_0943133
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-103] | LytTR[134-226]
- Domain count: 2
- Matched identifier: RROC_0943133
- Positioned domains: Response_reg 3-103 ; Response_reg 3-103 ; LytTR 134-226 ; LytTR 134-226
Cluster members and taxonomy
Representative gene: GCF_009680085#GKE10_RS03615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009680085
AssemblyASM968008v1 · Scaffoldhaploid
Genome composition3 200 077 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 54 · HK 26 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key